RNA-Seq Workshop June 26-27 2019

The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on 26th and 27th June 2019

Instructors: Dapeng Wang, Elton Vasconcelos, Chew Cheng

Helpers: Alysha Taylor

Day 1 (Wednesday 26th June 2019)

TimeSessionContentInstructorDurationVenue
09:10 Registration 20minCommon room
09:30Session 1HPC environment and Linux command lineDapeng Wang1h20minCluster 11.06 Worsley Building
10:50 Break 15minCommon room
11:05Session 2Data QC and preprocessingDapeng Wang1h25minCluster 11.06 Worsley Building
12:30 Lunch 45minCommon room
13:15Session 3Read alignmentDapeng Wang1h30minCluster 11.06 Worsley Building
14:45 Break 15minCommon room
15:00Session 4BAM manipulationChew Cheng1h30minCluster 11.06 Worsley Building
16:30 End   

Day 2 (Thursday 27th June 2019)

TimeSessionContentInstructorDurationVenue
09:30Session 1BAM visualizationElton Vasconcelos1h20minCluster 11.06 Worsley Building
10:50 Break 15minCommon room
11:05Session 2Obtain read countsDapeng Wang1h25minCluster 11.06 Worsley Building
12:30 Lunch 45minCommon room
13:15Session 3Differential expression analysisChew Cheng1h30minCluster 11.06 Worsley Building
14:45 Break 15minCommon room
15:00Session 4VisualizationElton Vasconcelos1h10minCluster 11.06 Worsley Building
16:10 Application examples 1Chew Cheng10minCluster 11.06 Worsley Building
16:20 Application examples 2Elton Vasconcelos10minCluster 11.06 Worsley Building
16:30 End   
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