RNA-Seq Workshop Feb 20-21 2019

The agenda of LeedsOmics Introduction to RNA-Seq Data Analysis Workshop on 20-21 Feb 2019

Instructors: Dapeng Wang, Elton Vasconcelos, Chew Cheng

Helpers: Ali Taylor, Katerina Douka, Isabel Birds

Day 1 (Wednesday Feb 20th, 2019)

Time Content Instructor Duration Venue
9:10 Registration (Tea/Coffee) Cluster 11.06 Worsley Building
9:30 HPC environment and Linux command line Dapeng Wang 1h30min Cluster 11.06 Worsley Building
11:00 Break (Tea/Coffee) Common room
11:15 Data QC and preprocessing Dapeng Wang 1h15min Cluster 11.06 Worsley Building
12:30 Lunch Common room
13:15 Read alignment Dapeng Wang 1h30min Cluster 11.06 Worsley Building
14:45 Break (Tea/Coffee) Common room
15:00 BAM manipulation Chew Cheng 1h Cluster 11.06 Worsley Building
16:00 BAM visualization Elton Vasconcelos 30min Cluster 11.06 Worsley Building
16:30 End

 

Day 2 (Thursday Feb 21st, 2019)

Time Content Instructor Duration Venue
9:30 Obtain read counts Dapeng Wang 1h30min Cluster 11.06 Worsley Building
11:00 Break (Tea/Coffee) Common room
11:15 Differential expression analysis Chew Cheng 1h15min Cluster 11.06 Worsley Building
12:30 Lunch Common room
13:15 Visualization Elton Vasconcelos 1h30min Cluster 11.06 Worsley Building
14:45 Break (Tea/Coffee) Common room
15:00 Alternative pipeline Dapeng Wang 1h30min Cluster 11.06 Worsley Building
16:30 End

 

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